Index

_

__call__() (simfish_rl.simfish_r2d2_network.R2D2SimfishNetwork method) _core (simfish_rl.simfish_r2d2_network.R2D2SimfishNetwork attribute) _duelling_head (simfish_rl.simfish_r2d2_network.R2D2SimfishNetwork attribute)

_embed (simfish_rl.simfish_r2d2_network.R2D2SimfishNetwork attribute) _get_local_scatter() (simulation.arena.FieldOfView method) _num_actions (simfish_rl.simfish_r2d2_network.R2D2SimfishNetwork attribute)

A

a_scaling_energy_cost (simulation.fish.Fish attribute) action_energy_reward_scaling (simulation.fish.Fish attribute) action_spec() (simulation.simfish_env.BaseEnvironment method) Actions (class in simulation.define_actions) actions (run_r2d2_simfish.SimfishR2D2Config attribute) (simulation.fish.Fish attribute)

add_noise_to_readings() (simulation.eye.Eye method) add_null_action() (simulation.define_actions.Actions method) Arena (class in simulation.arena) arena_height (simulation.arena.Arena attribute) arena_width (simulation.arena.Arena attribute)

B

BaseEnvironment (class in simulation.simfish_env) baseline_energy_use (simulation.fish.Fish attribute)

body (simulation.fish.Fish attribute) bottom_intensity (simulation.arena.Arena attribute) build_experiment_config() (in module run_r2d2_simfish)

C

capture_possible (simulation.fish.Fish attribute)

close() (simfish_rl.hdf5_logger.HDF5Logger method) conv_state (simulation.fish.Fish attribute)

D

d_scaling_energy_cost (simulation.fish.Fish attribute) dark_gain (simulation.arena.Arena attribute) dark_light_ratio (simulation.arena.Arena attribute) DeepSimfishTorso (class in simfish_rl.simfish_r2d2_network)

deterministic_action (simulation.fish.Fish attribute) display_actions() (simulation.define_actions.Actions method) distance_to_impulse_factor (simulation.fish.Fish attribute) draw_angle_dist() (simulation.fish.Fish method)

E

enclosed_fov_bottom (simulation.arena.FieldOfView attribute) enclosed_fov_left (simulation.arena.FieldOfView attribute) enclosed_fov_right (simulation.arena.FieldOfView attribute) enclosed_fov_top (simulation.arena.FieldOfView attribute) energy_level (simulation.fish.Fish attribute) env_height (simulation.arena.FieldOfView attribute)

env_variables (simulation.fish.Fish attribute) env_width (simulation.arena.FieldOfView attribute) EnvInfoKeep (class in simfish_rl.hdf5_logger) eval_agent() (in module simfish_rl.eval_simfish_agent) extract_bout_sample() (in module simulation.define_actions) Eye (class in simulation.eye)

F

FieldOfView (class in simulation.arena) Fish (class in simulation.fish) Flatten (class in simfish_rl.simfish_r2d2_network) from_hdf5() (simulation.define_actions.Actions method)

full_fov_bottom (simulation.arena.FieldOfView attribute) full_fov_left (simulation.arena.FieldOfView attribute) full_fov_right (simulation.arena.FieldOfView attribute) full_fov_top (simulation.arena.FieldOfView attribute)

G

get_action() (simulation.define_actions.Actions method) get_all_actions() (simulation.define_actions.Actions method) get_angles_and_distances() (in module simulation.define_actions) get_extracted_actions() (simulation.define_actions.Actions method) get_global_luminance() (simulation.arena.Arena method) get_global_sediment() (simulation.arena.Arena method) get_info() (simulation.simfish_env.BaseEnvironment method) get_masked_sediment() (simulation.arena.Arena method)

get_metrics() (simfish_rl.hdf5_logger.EnvInfoKeep method) (simfish_rl.hdf5_logger.SimpleEnvInfoKeep method) get_observation() (simulation.simfish_env.BaseEnvironment method) get_opposing_dict() (simulation.define_actions.Actions method) get_predator_angles_distance() (simulation.simfish_env.BaseEnvironment method) get_sliced_masked_image() (simulation.arena.FieldOfView method), [1] get_uv_luminance_mask() (simulation.arena.Arena method) global_luminance_mask (simulation.arena.Arena attribute) global_sediment_grating (simulation.arena.Arena attribute)

H

HDF5Logger (class in simfish_rl.hdf5_logger)

head (simulation.fish.Fish attribute) hungry (simulation.fish.Fish attribute)

I

illuminated_sediment (simulation.arena.Arena attribute)

initial_state() (simfish_rl.simfish_r2d2_network.R2D2SimfishNetwork method), [1]

L

left_eye (simulation.fish.Fish attribute) light_decay_rate (simulation.arena.FieldOfView attribute) light_gradient (simulation.arena.Arena attribute) local_fov_bottom (simulation.arena.FieldOfView attribute)

local_fov_left (simulation.arena.FieldOfView attribute) local_fov_right (simulation.arena.FieldOfView attribute) local_fov_top (simulation.arena.FieldOfView attribute) local_scatter (simulation.arena.FieldOfView attribute)

M

main() (in module run_r2d2_simfish) make_learner() (run_r2d2_simfish.SimfishR2D2Builder method) make_r2d2_networks() (in module simfish_rl.simfish_r2d2_network) making_capture (simulation.fish.Fish attribute) max_red_range (simulation.arena.Arena attribute) max_uv_range (simulation.arena.Arena attribute) max_visual_distance (simulation.arena.FieldOfView attribute) module run_r2d2_simfish simfish_rl simfish_rl.eval_simfish_agent simfish_rl.hdf5_logger simfish_rl.simfish_r2d2_learner simfish_rl.simfish_r2d2_network simulation simulation.arena simulation.constants simulation.define_actions simulation.eye simulation.fish simulation.geometry simulation.simfish_env

mouth (simulation.fish.Fish attribute)

N

no_collision() (simulation.simfish_env.BaseEnvironment static method)

num_actions (simfish_rl.simfish_r2d2_network.OAREmbedding attribute) (simulation.fish.Fish attribute)

O

OAREmbedding (class in simfish_rl.simfish_r2d2_network) observation_spec() (simulation.simfish_env.BaseEnvironment method) observe() (simfish_rl.hdf5_logger.EnvInfoKeep method) (simfish_rl.hdf5_logger.SimpleEnvInfoKeep method)

observe_first() (simfish_rl.hdf5_logger.EnvInfoKeep method) (simfish_rl.hdf5_logger.SimpleEnvInfoKeep method)

P

prev_action (simulation.fish.Fish attribute) prev_action_angle (simulation.fish.Fish attribute)

prev_action_distance (simulation.fish.Fish attribute) prey_consumed (simulation.fish.Fish attribute)

R

R2D2SimfishNetwork (class in simfish_rl.simfish_r2d2_network) read() (simulation.eye.Eye method) red_FOV (simulation.arena.Arena attribute) reflect_actions() (in module simfish_rl.simfish_r2d2_learner) reflect_observations() (in module simfish_rl.simfish_r2d2_learner) reflect_samples() (in module simfish_rl.simfish_r2d2_learner) reset() (simulation.arena.Arena method) (simulation.simfish_env.BaseEnvironment method)

resolve_visual_input() (simulation.simfish_env.BaseEnvironment method) retina (class in simfish_rl.simfish_r2d2_network) retinal_field (simulation.fish.Fish attribute) right_eye (simulation.fish.Fish attribute) rng (simulation.fish.Fish attribute) run_episode() (simfish_rl.eval_simfish_agent.StateEnvLoop method) run_r2d2_simfish module

S

sediment_sigma (simulation.arena.Arena attribute) sharpen_distributions() (simulation.define_actions.Actions method) simfish_rl module simfish_rl.eval_simfish_agent module simfish_rl.hdf5_logger module simfish_rl.simfish_r2d2_learner module simfish_rl.simfish_r2d2_network module SimfishR2D2Builder (class in run_r2d2_simfish) SimfishR2D2Config (class in run_r2d2_simfish) SimfishR2D2Learner (class in simfish_rl.simfish_r2d2_learner) SimpleEnvInfoKeep (class in simfish_rl.hdf5_logger) simulation module

simulation.arena module simulation.constants module simulation.define_actions module simulation.eye module simulation.fish module simulation.geometry module simulation.simfish_env module StateEnvLoop (class in simfish_rl.eval_simfish_agent) step() (simfish_rl.simfish_r2d2_learner.SimfishR2D2Learner method) (simulation.simfish_env.BaseEnvironment method)

T

tail (simulation.fish.Fish attribute) take_action() (simulation.fish.Fish method) test_mode (simulation.arena.Arena attribute) to_hdf5() (simulation.define_actions.Actions method)

torso (simfish_rl.simfish_r2d2_network.OAREmbedding attribute) touch_predator() (simulation.simfish_env.BaseEnvironment method) touched_edge (simulation.fish.Fish attribute) touched_edge_this_step (simulation.fish.Fish attribute) touched_predator (simulation.fish.Fish attribute)

U

unroll() (simfish_rl.simfish_r2d2_network.R2D2SimfishNetwork method), [1] update_energy_level() (simulation.fish.Fish method)

update_field_of_view() (simulation.arena.FieldOfView method), [1] uv_FOV (simulation.arena.Arena attribute)

V

verg_angle (simulation.fish.Fish attribute)

W

write() (simfish_rl.hdf5_logger.HDF5Logger method)